You are reading the documentation for version 1.6 of OpenStructure. You may also want to read the documentation for: 1.1 1.2 1.3 1.4 1.5 devel

Supported Sequence Profile File Formats

HHblits output

Recognized File Extensions
.hhm, .hhm.gz
Format Name
hhm

PSI-BLAST output

ASCII Table (PSSM) output of PSI-BLAST as generated with blastpgp and flag -Q.

Recognized File Extensions
.pssm, .pssm.gz
Format Name
pssm
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If something is missing or if you need the C++ API description in doxygen style, check our old documentation for further information.

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