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Supported Sequence Profile File Formats

HHblits output

Recognized File Extensions
.hhm, .hhm.gz
Format Name
hhm

PSI-BLAST output

ASCII Table (PSSM) output of PSI-BLAST as generated with blastpgp and flag -Q.

Recognized File Extensions
.pssm, .pssm.gz
Format Name
pssm

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