OpenStructure
sec_structure_segments.hh
Go to the documentation of this file.
1 //------------------------------------------------------------------------------
2 // This file is part of the OpenStructure project <www.openstructure.org>
3 //
4 // Copyright (C) 2008-2011 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
7 // the terms of the GNU Lesser General Public License as published by the Free
8 // Software Foundation; either version 3.0 of the License, or (at your option)
9 // any later version.
10 // This library is distributed in the hope that it will be useful, but WITHOUT
11 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
12 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
13 // details.
14 //
15 // You should have received a copy of the GNU Lesser General Public License
16 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
18 //------------------------------------------------------------------------------
19 #ifndef OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH
20 #define OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH
21 
22 /*
23  Author: Marco Biasini
24  */
25 #include <ost/mol/entity_handle.hh>
27 
28 namespace ost { namespace mol { namespace alg {
29 
33  first(f), last(l), ss_type(s)
34  { }
36  first(0), last(0), ss_type(SecStructure::COIL)
37  { }
39  int first;
41  int last;
44 };
45 
46 typedef std::vector<SecStructureSegment> SecStructureSegments;
47 
53 
54 
56 ExtractHelicalSegments(const ChainHandle& chain);
59 ExtractHelicalSegments(const ChainView& chain);
62 ExtractExtendedSegments(const ChainHandle& chain);
65 ExtractExtendedSegments(const ChainView& chain);
68 ExtractSecStructureSegments(const ChainHandle& chain);
69 
72 ExtractSecStructureSegments(const ChainView& chain);
74 
75 }}}
76 
77 #endif