OpenStructure
load.hh
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1 //------------------------------------------------------------------------------
2 // This file is part of the OpenStructure project <www.openstructure.org>
3 //
4 // Copyright (C) 2008-2011 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
7 // the terms of the GNU Lesser General Public License as published by the Free
8 // Software Foundation; either version 3.0 of the License, or (at your option)
9 // any later version.
10 // This library is distributed in the hope that it will be useful, but WITHOUT
11 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
12 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
13 // details.
14 //
15 // You should have received a copy of the GNU Lesser General Public License
16 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
18 //------------------------------------------------------------------------------
19 #ifndef OST_IO_LOAD_ALIGNMENT_HH
20 #define OST_IO_LOAD_ALIGNMENT_HH
21 
22 /*
23  Author: Marco Biasini
24  */
25 
26 #include <ost/io/module_config.hh>
27 #include <ost/seq/sequence_list.hh>
29 namespace ost { namespace io {
30 
31 
32 seq::AlignmentHandle DLLEXPORT_OST_IO
33 LoadAlignment(const String& file_name, const String& format="auto");
34 
35 seq::AlignmentHandle DLLEXPORT_OST_IO
36 AlignmentFromStream(std::istream& stream, const String& format);
37 
38 seq::AlignmentHandle DLLEXPORT_OST_IO
39 AlignmentFromString(const String& data, const String& format);
40 
41 
43 LoadSequenceList(const String& file_name, const String& format="auto");
44 
46 SequenceListFromStream(std::istream& stream, const String& format);
47 
49 SequenceListFromString(const String& data, const String& format);
50 
51 seq::SequenceHandle DLLEXPORT_OST_IO
52 LoadSequence(const String& file_name, const String& format="auto");
53 
54 seq::SequenceHandle DLLEXPORT_OST_IO
55 SequenceFromStream(std::istream& stream, const String& format);
56 
57 seq::SequenceHandle DLLEXPORT_OST_IO
58 SequenceFromString(const String& data, const String& format);
59 
60 }}
61 
62 #endif