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profile_handle.hh File Reference
#include <ost/base.hh>
#include <ost/stdint.hh>
#include <ost/message.hh>
#include <ost/seq/module_config.hh>
#include <string.h>
#include <vector>
#include <map>
#include <fstream>
#include <boost/shared_ptr.hpp>

Go to the source code of this file.

Data Structures

class  HMMData
 
class  ProfileColumn
 
class  ProfileHandle
 
class  ProfileDB
 

Namespaces

 ost
 
 ost::seq
 

Typedefs

typedef boost::shared_ptr
< ProfileHandle > 
ProfileHandlePtr
 
typedef boost::shared_ptr
< HMMData > 
HMMDataPtr
 
typedef std::vector
< ProfileHandlePtr > 
ProfileHandleList
 
typedef boost::shared_ptr
< ProfileDB > 
ProfileDBPtr
 
typedef std::vector
< ProfileColumn > 
ProfileColumnList
 

Enumerations

enum  HMMTransition {
  HMM_M2M = 0, HMM_M2I = 1, HMM_M2D = 2, HMM_I2M = 3,
  HMM_I2I = 4, HMM_D2M = 5, HMM_D2D = 6
}