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mat.py
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1 from ost.seq.alg import SubstWeightMatrix
2 
3 def _InitMatrix(preset_enum):
4  mat = SubstWeightMatrix()
5  mat.AssignPreset(preset_enum)
6  return mat
7 
8 BLOSUM45 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM45)
9 BLOSUM62 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM62)
10 BLOSUM80 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM80)
11 BLOSUM100 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM100)
12 IDENTITY = _InitMatrix(SubstWeightMatrix.Preset.IDENTITY)
13 MATCH = _InitMatrix(SubstWeightMatrix.Preset.MATCH)
14 NUC44 = _InitMatrix(SubstWeightMatrix.Preset.NUC44)
15 
16 __all__=['BLOSUM45','BLOSUM62','BLOSUM80','BLOSUM100', 'IDENTITY', 'MATCH',
17  'NUC44']
ost::seq::alg::SubstWeightMatrix
position-independet substitution weight matrix
Definition: subst_weight_matrix.hh:38
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