bindings
– Interfacing external programsΒΆ
The bindings module contains functions and classes that interface with command-line programs commonly used in bioinformatics.
If you would like to write your own wrapper, consult Using External Programs within OpenStructure.
So far, the binding module includes:
dssp
- Secondary structure assignmentblast
- Search related sequences in databaseshhblits
- Search related sequences in databasesmsms
– Calculating Molecular Surfacestmtools
- Structural superpositionclustalw
- Perform multiple sequence alignmenthbplus
- Perform hydrogen bond analysiskclust
- Perform fast and sensitive clusteringnaccess
- Calculate accessible area of a moleculelga
- Find 3D similarities in protein structurescadscore
- Compare protein structures by difference between physical contacts