bindings – Interfacing external programsΒΆ
The bindings module contains functions and classes that interface with command-line programs commonly used in bioinformatics.
If you would like to write your own wrapper, consult Using External Programs within OpenStructure.
So far, the binding module includes:
- dssp - Secondary structure assignment
- blast - Search related sequences in databases
- msms – Calculating Molecular Surfaces
- tmtools - Structural superposition
- clustalw - Perform multiple sequence alignment
- hbplus - Perform hydrogen bond analysis
- kclust - Perform fast and sensitive clustering
- naccess - Calculate accessible area of a molecule
- lga - Find 3D similarities in protein structures
- cadscore - Compare protein structures by difference between physical contacts