local_dist_diff_test.hh File Reference

#include <ost/mol/alg/module_config.hh>
#include <ost/mol/entity_handle.hh>
#include <ost/seq/alignment_handle.hh>
#include <ost/mol/alg/distance_test_common.hh>
#include <ost/mol/alg/filter_clashes.hh>

Go to the source code of this file.

Data Structures
struct	StereoChemicalProps
struct	lDDTSettings
struct	lDDTLocalScore
class	lDDTScorer

Namespaces
	ost
	ost::mol
	ost::mol::alg

Functions
std::pair< int, int > DLLEXPORT_OST_MOL_ALG	ComputeCoverage (const EntityView &v, const GlobalRDMap &glob_dist_list)
bool DLLEXPORT_OST_MOL_ALG	IsResnumInGlobalRDMap (const ResNum &resnum, const GlobalRDMap &glob_dist_list)
std::pair< long int, long int > DLLEXPORT_OST_MOL_ALG	LocalDistDiffTest (const EntityView &mdl, const GlobalRDMap &dist_list, std::vector< Real > cutoff_list, int sequence_separation=0, const String &local_ldt_property_string="")
Real DLLEXPORT_OST_MOL_ALG	LocalDistDiffTest (const EntityView &mdl, const EntityView &target, Real cutoff, Real max_dist, const String &local_ldt_property_string="")
Real DLLEXPORT_OST_MOL_ALG	LocalDistDiffTest (const EntityView &v, std::vector< EntityView > &ref_list, const GlobalRDMap &glob_dist_list, lDDTSettings &settings)
Real DLLEXPORT_OST_MOL_ALG	LocalDistDiffTest (const ost::seq::AlignmentHandle &aln, Real cutoff, Real max_dist, int ref_index=0, int mdl_index=1)
Real DLLEXPORT_OST_MOL_ALG	LDDTHA (EntityView &v, const GlobalRDMap &global_dist_list, int sequence_separation=0)
GlobalRDMap DLLEXPORT_OST_MOL_ALG	CreateDistanceList (const EntityView &ref, Real max_dist)
GlobalRDMap DLLEXPORT_OST_MOL_ALG	CreateDistanceListFromMultipleReferences (const std::vector< EntityView > &ref_list, std::vector< Real > &cutoff_list, int sequence_separation, Real max_dist)
void DLLEXPORT_OST_MOL_ALG	PrintGlobalRDMap (const GlobalRDMap &glob_dist_list)
void DLLEXPORT_OST_MOL_ALG	PrintResidueRDMap (const ResidueRDMap &res_dist_list)
bool DLLEXPORT_OST_MOL_ALG	IsStandardResidue (String rn)
void DLLEXPORT_OST_MOL_ALG	CleanlDDTReferences (std::vector< EntityView > &ref_list)
GlobalRDMap DLLEXPORT_OST_MOL_ALG	PreparelDDTGlobalRDMap (const std::vector< EntityView > &ref_list, std::vector< Real > &cutoff_list, int sequence_separation, Real max_dist)
void DLLEXPORT_OST_MOL_ALG	CheckStructure (EntityView &ent, StereoChemicalParams &bond_table, StereoChemicalParams &angle_table, ClashingDistances &nonbonded_table, Real bond_tolerance, Real angle_tolerance)
std::vector< lDDTLocalScore > DLLEXPORT_OST_MOL_ALG	GetlDDTPerResidueStats (EntityView &model, GlobalRDMap &glob_dist_list, bool structural_checks, String label)
void DLLEXPORT_OST_MOL_ALG	PrintlDDTPerResidueStats (std::vector< lDDTLocalScore > &scores, bool structural_checks, int cutoffs_length)