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contact_prediction_score.hh File Reference
#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/module_config.hh>
#include <ost/seq/alg/pair_subst_weight_matrix.hh>
#include <ost/seq/alg/contact_weight_matrix.hh>

Go to the source code of this file.

Data Structures

struct  ContactPredictionScoreResult
 

Namespaces

 ost
 
 ost::seq
 
 ost::seq::alg
 

Functions

ContactPredictionScoreResult
DLLEXPORT_OST_SEQ_ALG 
CalculateContactScore (const AlignmentHandle &aln, ContactWeightMatrix w=LoadDefaultContactWeightMatrix())
 
ContactPredictionScoreResult
DLLEXPORT_OST_SEQ_ALG 
CalculateContactSubstitutionScore (const AlignmentHandle &aln, int ref_seq_index=0, PairSubstWeightMatrix w=LoadDefaultPairSubstWeightMatrix())
 
ContactPredictionScoreResult
DLLEXPORT_OST_SEQ_ALG 
CalculateMutualInformation (const AlignmentHandle &aln, ContactWeightMatrix w=LoadConstantContactWeightMatrix(), bool apc_correction=true, bool zpx_transformation=true, float small_number_correction=0.05)