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stage
include
ost
mol
alg
sec_structure_segments.hh
Go to the documentation of this file.
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//------------------------------------------------------------------------------
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// This file is part of the OpenStructure project <www.openstructure.org>
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//
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// Copyright (C) 2008-2011 by the OpenStructure authors
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//
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// This library is free software; you can redistribute it and/or modify it under
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// the terms of the GNU Lesser General Public License as published by the Free
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// Software Foundation; either version 3.0 of the License, or (at your option)
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// any later version.
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// This library is distributed in the hope that it will be useful, but WITHOUT
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// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
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// details.
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//
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// You should have received a copy of the GNU Lesser General Public License
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// along with this library; if not, write to the Free Software Foundation, Inc.,
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// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
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//------------------------------------------------------------------------------
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#ifndef OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH
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#define OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH
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/*
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Author: Marco Biasini
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*/
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#include <
ost/mol/entity_handle.hh
>
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#include <
ost/mol/alg/module_config.hh
>
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namespace
ost {
namespace
mol {
namespace
alg {
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struct
DLLEXPORT_OST_MOL_ALG
SecStructureSegment
{
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SecStructureSegment
(
int
f,
int
l,
SecStructure
s):
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first(f), last(l), ss_type(s)
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{ }
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SecStructureSegment
():
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first(0), last(0), ss_type(
SecStructure
::COIL)
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{ }
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int
first
;
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int
last
;
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SecStructure
ss_type
;
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};
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typedef
std::vector<SecStructureSegment>
SecStructureSegments
;
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SecStructureSegments
DLLEXPORT_OST_MOL_ALG
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ExtractHelicalSegments(
const
ChainHandle
& chain);
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SecStructureSegments
DLLEXPORT_OST_MOL_ALG
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ExtractHelicalSegments(
const
ChainView
& chain);
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SecStructureSegments
DLLEXPORT_OST_MOL_ALG
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ExtractExtendedSegments(
const
ChainHandle
& chain);
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SecStructureSegments
DLLEXPORT_OST_MOL_ALG
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ExtractExtendedSegments(
const
ChainView
& chain);
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SecStructureSegments
DLLEXPORT_OST_MOL_ALG
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ExtractSecStructureSegments(
const
ChainHandle
& chain);
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SecStructureSegments
DLLEXPORT_OST_MOL_ALG
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ExtractSecStructureSegments(
const
ChainView
& chain);
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}}}
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#endif
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