sec_structure_segments.hh

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//------------------------------------------------------------------------------
// This file is part of the OpenStructure project <www.openstructure.org>
//
// Copyright (C) 2008-2011 by the OpenStructure authors
//
// This library is free software; you can redistribute it and/or modify it under
// the terms of the GNU Lesser General Public License as published by the Free
// Software Foundation; either version 3.0 of the License, or (at your option)
// any later version.
// This library is distributed in the hope that it will be useful, but WITHOUT
// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
// details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with this library; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
//------------------------------------------------------------------------------
#ifndef OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH
#define OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH

/*
  Author: Marco Biasini
 */
#include <ost/mol/entity_handle.hh>
#include <ost/mol/alg/module_config.hh>

namespace ost { namespace mol { namespace alg {

struct DLLEXPORT_OST_MOL_ALG SecStructureSegment {
  SecStructureSegment(int f, int l, SecStructure s):
    first(f), last(l), ss_type(s) 
  { }
  SecStructureSegment():
    first(0), last(0), ss_type(SecStructure::COIL)
  { }
  int                first;
  int                last;
  SecStructure       ss_type;
};

typedef std::vector<SecStructureSegment> SecStructureSegments;



SecStructureSegments DLLEXPORT_OST_MOL_ALG 
ExtractHelicalSegments(const ChainHandle& chain);
SecStructureSegments DLLEXPORT_OST_MOL_ALG 
ExtractHelicalSegments(const ChainView& chain);
SecStructureSegments DLLEXPORT_OST_MOL_ALG 
ExtractExtendedSegments(const ChainHandle& chain);
SecStructureSegments DLLEXPORT_OST_MOL_ALG 
ExtractExtendedSegments(const ChainView& chain);
SecStructureSegments DLLEXPORT_OST_MOL_ALG 
ExtractSecStructureSegments(const ChainHandle& chain);

SecStructureSegments DLLEXPORT_OST_MOL_ALG 
ExtractSecStructureSegments(const ChainView& chain);

}}}

#endif