processor.hh File Reference

#include <ost/mol/entity_handle.hh>
#include "module_config.hh"
#include "diag.hh"
#include "compound.hh"

Go to the source code of this file.

Data Structures
class	Processor

Namespaces
namespace	ost
namespace	ost::conop

Typedefs
typedef boost::shared_ptr < Processor >	ProcessorPtr

Enumerations
enum	Dialect { PDB_DIALECT, CHARMM_DIALECT }
enum	ConopAction {   CONOP_WARN = 0, CONOP_SILENT, CONOP_REMOVE, CONOP_REMOVE_ATOM,   CONOP_REMOVE_RESIDUE, CONOP_FATAL }

Functions
ConopAction DLLIMPORT	ConopActionFromString (const String &name)
String DLLIMPORT	StringFromConopAction (ConopAction action)
String DLLIMPORT	GuessAtomElement (const String &atom_name, bool hetatm, int atom_count)
mol::ChemClass DLLIMPORT	GuessChemClass (mol::ResidueHandle res)
void DLLIMPORT	AssignBackboneTorsions (mol::ChainHandle chain)
void DLLIMPORT	AssignBackboneTorsions (mol::ResidueHandleList residues)
void DLLIMPORT	AssignBackboneTorsions (mol::ResidueHandle prev, mol::ResidueHandle res, mol::ResidueHandle next)
bool DLLIMPORT	IsBondFeasible (const mol::AtomHandle &, const mol::AtomHandle &)
mol::AtomHandleList DLLIMPORT	GetUnknownAtomsOfResidue (mol::ResidueHandle residue, CompoundPtr compound, bool strict_hydrogens=false)