stage/include/ost/seq/profile_handle.hh File Reference

#include <ost/base.hh>
#include <ost/stdint.hh>
#include <ost/message.hh>
#include <ost/seq/module_config.hh>
#include <string.h>
#include <vector>
#include <map>
#include <fstream>
#include <boost/shared_ptr.hpp>

Go to the source code of this file.

Data Structures
class	ProfileColumn
	Defines profile of 20 frequencies for one residue. More...
class	ProfileHandle
	Provides a profile for a sequence. More...
class	ProfileDB
	Contains a DB of profiles (identified by a unique name (String)). More...
Namespaces
namespace	ost
namespace	ost::seq
Typedefs
typedef boost::shared_ptr < ProfileHandle >	ProfileHandlePtr
typedef boost::shared_ptr < ProfileDB >	ProfileDBPtr
typedef std::vector < ProfileColumn >	ProfileColumnList