stage/include/ost/seq/alg/local_align.hh File Reference

#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/subst_weight_matrix.hh>
#include "module_config.hh"

Go to the source code of this file.

Namespaces
namespace	ost
namespace	ost::seq
namespace	ost::seq::alg
Functions
AlignmentList DLLEXPORT_OST_SEQ_ALG	LocalAlign (const ConstSequenceHandle &s1, const ConstSequenceHandle &s2, SubstWeightMatrixPtr &subst, int gap_open=-5, int gap_ext=-2)