OpenStructure: stage/include/ost/seq/alg/conservation.hh Source File

00001 //------------------------------------------------------------------------------
00002 // This file is part of the OpenStructure project <www.openstructure.org>
00003 //
00004 // Copyright (C) 2008-2011 by the OpenStructure authors
00005 //
00006 // This library is free software; you can redistribute it and/or modify it under
00007 // the terms of the GNU Lesser General Public License as published by the Free
00008 // Software Foundation; either version 3.0 of the License, or (at your option)
00009 // any later version.
00010 // This library is distributed in the hope that it will be useful, but WITHOUT
00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00012 // FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
00013 // details.
00014 //
00015 // You should have received a copy of the GNU Lesser General Public License
00016 // along with this library; if not, write to the Free Software Foundation, Inc.,
00017 // 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
00018 //------------------------------------------------------------------------------
00019 
00020 #include <ost/seq/alignment_handle.hh>
00021 #include <ost/seq/alg/module_config.hh>
00022 
00023 /*
00024   Authors: Marco Biasini
00025  */
00026 namespace ost { namespace seq { namespace alg {
00027 
00044 std::vector<Real> DLLEXPORT_OST_SEQ_ALG Conservation(const AlignmentHandle& aln,
00045                                              bool assign=true,
00046                                              const String& prop_name="cons",
00047                                              bool ignore_gap=false);
00048 }}}
00049