stage/include/ost/seq/alg/contact_prediction_score.hh File Reference

#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/module_config.hh>
#include <ost/seq/alg/pair_subst_weight_matrix.hh>
#include <ost/seq/alg/contact_weight_matrix.hh>

Go to the source code of this file.

Data Structures
struct	ContactPredictionScoreResult
Namespaces
namespace	ost
namespace	ost::seq
namespace	ost::seq::alg
Functions
ContactPredictionScoreResult DLLEXPORT_OST_SEQ_ALG	CalculateContactScore (const AlignmentHandle &aln, ContactWeightMatrix w=LoadDefaultContactWeightMatrix())
ContactPredictionScoreResult DLLEXPORT_OST_SEQ_ALG	CalculateContactSubstitutionScore (const AlignmentHandle &aln, int ref_seq_index=0, PairSubstWeightMatrix w=LoadDefaultPairSubstWeightMatrix())
ContactPredictionScoreResult DLLEXPORT_OST_SEQ_ALG	CalculateMutualInformation (const AlignmentHandle &aln, ContactWeightMatrix w=LoadConstantContactWeightMatrix(), bool apc_correction=true, bool zpx_transformation=true, float small_number_correction=0.05)