stage/include/ost/mol/alg/sec_structure_segments.hh
Go to the documentation of this file.00001 //------------------------------------------------------------------------------ 00002 // This file is part of the OpenStructure project <www.openstructure.org> 00003 // 00004 // Copyright (C) 2008-2011 by the OpenStructure authors 00005 // 00006 // This library is free software; you can redistribute it and/or modify it under 00007 // the terms of the GNU Lesser General Public License as published by the Free 00008 // Software Foundation; either version 3.0 of the License, or (at your option) 00009 // any later version. 00010 // This library is distributed in the hope that it will be useful, but WITHOUT 00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00012 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more 00013 // details. 00014 // 00015 // You should have received a copy of the GNU Lesser General Public License 00016 // along with this library; if not, write to the Free Software Foundation, Inc., 00017 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 00018 //------------------------------------------------------------------------------ 00019 #ifndef OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH 00020 #define OST_MOL_ALG_SEC_STRUCTURE_SEGMENTS_HH 00021 00022 /* 00023 Author: Marco Biasini 00024 */ 00025 #include <ost/mol/entity_handle.hh> 00026 #include <ost/mol/alg/module_config.hh> 00027 00028 namespace ost { namespace mol { namespace alg { 00029 00031 struct DLLEXPORT_OST_MOL_ALG SecStructureSegment { 00032 SecStructureSegment(int f, int l, SecStructure s): 00033 first(f), last(l), ss_type(s) 00034 { } 00035 SecStructureSegment(): 00036 first(0), last(0), ss_type(SecStructure::COIL) 00037 { } 00039 int first; 00041 int last; 00043 SecStructure ss_type; 00044 }; 00045 00046 typedef std::vector<SecStructureSegment> SecStructureSegments; 00047 00053 00054 00055 SecStructureSegments DLLEXPORT_OST_MOL_ALG 00056 ExtractHelicalSegments(const ChainHandle& chain); 00058 SecStructureSegments DLLEXPORT_OST_MOL_ALG 00059 ExtractHelicalSegments(const ChainView& chain); 00061 SecStructureSegments DLLEXPORT_OST_MOL_ALG 00062 ExtractExtendedSegments(const ChainHandle& chain); 00064 SecStructureSegments DLLEXPORT_OST_MOL_ALG 00065 ExtractExtendedSegments(const ChainView& chain); 00067 SecStructureSegments DLLEXPORT_OST_MOL_ALG 00068 ExtractSecStructureSegments(const ChainHandle& chain); 00069 00071 SecStructureSegments DLLEXPORT_OST_MOL_ALG 00072 ExtractSecStructureSegments(const ChainView& chain); 00074 00075 }}} 00076 00077 #endif
