00001 //------------------------------------------------------------------------------ 00002 // This file is part of the OpenStructure project <www.openstructure.org> 00003 // 00004 // Copyright (C) 2008-2011 by the OpenStructure authors 00005 // 00006 // This library is free software; you can redistribute it and/or modify it under 00007 // the terms of the GNU Lesser General Public License as published by the Free 00008 // Software Foundation; either version 3.0 of the License, or (at your option) 00009 // any later version. 00010 // This library is distributed in the hope that it will be useful, but WITHOUT 00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00012 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more 00013 // details. 00014 // 00015 // You should have received a copy of the GNU Lesser General Public License 00016 // along with this library; if not, write to the Free Software Foundation, Inc., 00017 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 00018 //------------------------------------------------------------------------------ 00019 #ifndef OST_SEQ_PAIR_SUBST_WEIGHT_MATRIX_HH 00020 #define OST_SEQ_PAIR_SUBST_WEIGHT_MATRIX_HH 00021 00022 #include <map> 00023 #include <vector> 00024 00025 #include <ost/base.hh> 00026 #include <ost/seq/alg/module_config.hh> 00027 00028 00029 /* 00030 Author: Niklaus Johner 00031 */ 00032 namespace ost { namespace seq { namespace alg { 00033 00034 00036 struct DLLEXPORT_OST_SEQ_ALG PairSubstWeightMatrix { 00037 std::vector <std::vector <std::vector <std::vector <Real> > > > weights; 00038 std::vector <char> aa_list; 00039 std::map <char,int> aa_dict; 00040 int naa_; 00041 00042 PairSubstWeightMatrix(); 00043 PairSubstWeightMatrix(std::vector <std::vector <std::vector <std::vector <Real> > > >,std::vector <char>); 00044 }; 00045 00046 PairSubstWeightMatrix DLLEXPORT_OST_SEQ_ALG LoadDefaultPairSubstWeightMatrix(); 00047 00048 }}} 00049 00050 #endif