stage/include/ost/seq/profile_handle.hh File Reference

#include <ost/base.hh>
#include <ost/stdint.hh>
#include <ost/message.hh>
#include <ost/seq/module_config.hh>
#include <string.h>
#include <vector>
#include <map>
#include <fstream>
#include <boost/shared_ptr.hpp>

Go to the source code of this file.

Data Structures

class  ProfileColumn
 Defines profile of 20 frequencies for one residue. More...
class  ProfileHandle
 Provides a profile for a sequence. More...
class  ProfileDB
 Contains a DB of profiles (identified by a unique name (String)). More...

Namespaces

namespace  ost
namespace  ost::seq

Typedefs

typedef boost::shared_ptr
< ProfileHandle > 
ProfileHandlePtr
typedef std::vector
< ProfileHandlePtr > 
ProfileHandleList
typedef boost::shared_ptr
< ProfileDB > 
ProfileDBPtr
typedef std::vector
< ProfileColumn > 
ProfileColumnList
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