stage/include/ost/seq/alg/clip_alignment.hh
Go to the documentation of this file.00001 //------------------------------------------------------------------------------ 00002 // This file is part of the OpenStructure project <www.openstructure.org> 00003 // 00004 // Copyright (C) 2008-2016 by the OpenStructure authors 00005 // 00006 // This library is free software; you can redistribute it and/or modify it under 00007 // the terms of the GNU Lesser General Public License as published by the Free 00008 // Software Foundation; either version 3.0 of the License, or (at your option) 00009 // any later version. 00010 // This library is distributed in the hope that it will be useful, but WITHOUT 00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00012 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more 00013 // details. 00014 // 00015 // You should have received a copy of the GNU Lesser General Public License 00016 // along with this library; if not, write to the Free Software Foundation, Inc., 00017 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 00018 //------------------------------------------------------------------------------ 00019 00020 /* 00021 Author: Gerardo Tauriello, Juergen Haas 00022 */ 00023 00024 #ifndef OST_SEQ_ALG_CLIP_ALIGNMENT_HH 00025 #define OST_SEQ_ALG_CLIP_ALIGNMENT_HH 00026 00027 #include <ost/seq/alignment_handle.hh> 00028 #include <ost/seq/alg/module_config.hh> 00029 00030 namespace ost { namespace seq { namespace alg { 00031 00042 int DLLEXPORT_OST_SEQ_ALG 00043 ClipAlignment(AlignmentHandle& aln, uint n_seq_thresh=2, bool set_offset=true, 00044 bool remove_empty=true); 00045 }}} 00046 00047 #endif
