00001 //------------------------------------------------------------------------------ 00002 // This file is part of the OpenStructure project <www.openstructure.org> 00003 // 00004 // Copyright (C) 2008-2011 by the OpenStructure authors 00005 // 00006 // This library is free software; you can redistribute it and/or modify it under 00007 // the terms of the GNU Lesser General Public License as published by the Free 00008 // Software Foundation; either version 3.0 of the License, or (at your option) 00009 // any later version. 00010 // This library is distributed in the hope that it will be useful, but WITHOUT 00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00012 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more 00013 // details. 00014 // 00015 // You should have received a copy of the GNU Lesser General Public License 00016 // along with this library; if not, write to the Free Software Foundation, Inc., 00017 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 00018 //------------------------------------------------------------------------------ 00019 #ifndef OST_IO_SEQ_SAVE_HH 00020 #define OST_IO_SEQ_SAVE_HH 00021 00022 /* 00023 Author: Marco Biasini 00024 */ 00025 #include <ost/io/module_config.hh> 00026 #include <ost/seq/alignment_handle.hh> 00027 #include <ost/seq/sequence_list.hh> 00028 namespace ost { namespace io { 00029 00030 void DLLEXPORT_OST_IO SaveSequenceList(const seq::ConstSequenceList& seq_list, 00031 const String& filename, 00032 const String& format="auto"); 00033 00034 String DLLEXPORT_OST_IO 00035 SequenceListToString(const seq::ConstSequenceList& seq_list, 00036 const String& format); 00037 00038 void DLLEXPORT_OST_IO 00039 SaveSequence(const seq::ConstSequenceHandle& sequence, const String& filename, 00040 const String& format="auto"); 00041 00042 00043 String DLLEXPORT_OST_IO 00044 SequenceToString(const seq::ConstSequenceHandle& sequence, 00045 const String& format="auto"); 00046 00047 void DLLEXPORT_OST_IO SaveAlignment(const seq::AlignmentHandle& msa, 00048 const String& filename, 00049 const String& format="auto"); 00050 00051 String DLLEXPORT_OST_IO AlignmentToString(const seq::AlignmentHandle& msa, 00052 const String& format); 00053 00054 }} 00055 00056 #endif