stage/include/ost/seq/alg/sequence_similarity.hh
Go to the documentation of this file.00001 //------------------------------------------------------------------------------ 00002 // This file is part of the OpenStructure project <www.openstructure.org> 00003 // 00004 // Copyright (C) 2008-2015 by the OpenStructure authors 00005 // 00006 // This library is free software; you can redistribute it and/or modify it under 00007 // the terms of the GNU Lesser General Public License as published by the Free 00008 // Software Foundation; either version 3.0 of the License, or (at your option) 00009 // any later version. 00010 // This library is distributed in the hope that it will be useful, but WITHOUT 00011 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00012 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more 00013 // details. 00014 // 00015 // You should have received a copy of the GNU Lesser General Public License 00016 // along with this library; if not, write to the Free Software Foundation, Inc., 00017 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 00018 //------------------------------------------------------------------------------ 00019 #ifndef OST_SEQ_SEQUENCE_SIMILARITY_HH 00020 #define OST_SEQ_SEQUENCE_SIMILARITY_HH 00021 00022 #include <ost/seq/alg/module_config.hh> 00023 #include <ost/seq/alignment_handle.hh> 00024 #include <ost/seq/alg/subst_weight_matrix.hh> 00025 00026 namespace ost { namespace seq { namespace alg { 00027 00033 Real DLLEXPORT_OST_SEQ_ALG 00034 SequenceSimilarity(const AlignmentHandle& aln, SubstWeightMatrixPtr subst, 00035 bool normalize=false, int seq_a=0, int seq_b=1); 00036 00037 }}} 00038 00039 #endif
