TMAlignResult Class Reference

Public Member Functions
def	__init__

Data Fields
	rmsd
	tm_score
	aligned_length
	transform
	ref_sequence
	alignment

Detailed Description

Holds the result of running TMalign

.. attribute:: rmsd
  
  The RMSD of the common Calpha atoms of both structures

.. attribute:: transform

  The transform that superposes the model onto the reference structure.
  
  :type: :class:`~ost.geom.Mat4`

.. attribute:: alignment

  The alignment of the structures, that is the pairing of Calphas of both 
  structures. Since the programs only read ATOM records, residues consisting 
  of HETATMs (MSE) are not included in the alignment.
  
  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: tm_score

  The TM-score of the structural superposition

Definition at line 54 of file tmtools.py.

Constructor & Destructor Documentation

def __init__	(		self,
			rmsd,
			tm_score,
			aligned_length,
			transform,
			ref_sequence,
			alignment
	)

Definition at line 82 of file tmtools.py.

Field Documentation

aligned_length

Definition at line 86 of file tmtools.py.

alignment

Definition at line 89 of file tmtools.py.

ref_sequence

Definition at line 88 of file tmtools.py.

rmsd

Definition at line 84 of file tmtools.py.

tm_score

Definition at line 85 of file tmtools.py.

transform

Definition at line 87 of file tmtools.py.

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The documentation for this class was generated from the following file:

• stage/lib64/python2.7/site-packages/ost/bindings/tmtools.py