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b | |
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ost.bindings |
Contains bindings for external programs |
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ost.bindings.blast |
Search related sequences in databases |
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ost.bindings.cadscore |
Compare protein structures by difference between physical contacts |
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ost.bindings.clustalw |
Perform multiple sequence alignment |
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ost.bindings.dockq |
Evaluate protein-protein interfaces |
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ost.bindings.dssp |
Interface to the DSSP command line utility |
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ost.bindings.hbplus |
Perform hydrogen bond analysis |
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ost.bindings.hhblits3 |
Search related sequences in databases |
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ost.bindings.kclust |
Perform fast and sensitive clustering |
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ost.bindings.lga |
Find 3D similarities in protein structures |
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ost.bindings.naccess |
Calculate accessible area of a molecule |
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ost.bindings.tmtools |
Sequence dependent and independent structure superposition |
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c | |
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ost.conop |
The conop modules implement different strategies to derive
connectivity information of molecules. |
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ost.conop.cleanup |
Contains functions to sanitize (cleanup) structures by using
information from the compound library. |
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g | |
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ost.geom |
Functions and classes for vectors, matrices and geometrical
objects in 2, 3 and four dimensions |
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ost.gfx |
Realtime 3D Rendering |
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ost.gui |
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i | |
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ost.img |
Images and density maps |
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ost.img.alg |
Image processing algorithms |
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ost.io |
Input and output of sequences, alignments, structures, images and density maps. |
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m | |
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ost.mol |
Contains classes and functions to deal with molecular structures
and surfaces |
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ost.mol.alg |
Algorithms operating on molecular structures |
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ost.mol.alg.helix_kinks |
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ost.mol.alg.qsscoring |
Scoring of quaternary structures |
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ost.mol.alg.structure_analysis |
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ost.mol.alg.trajectory_analysis |
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ost.mol.mm |
Wrapper for OpenMM molecular mechanics simulations |
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ost.mol.mm.antechamber |
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s | |
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ost.seq |
Contains classes and functions to deal with sequences and
alignments |
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ost.seq.alg |
Algorithms for sequences |
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ost.settings |
Helper Functions to Locate Files and Retrieve Preferences |
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t | |
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ost.table |
Working with tabular data |
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ost.testutils |
Helper Functions to Run Python Unittests |