Python Module Index
| b | ||
ost.bindings | Contains bindings for external programs | |
ost.bindings.blast | Search related sequences in databases | |
ost.bindings.cadscore | Compare protein structures by difference between physical contacts | |
ost.bindings.clustalw | Perform multiple sequence alignment | |
ost.bindings.dockq | Evaluate protein-protein interfaces | |
ost.bindings.dssp | Interface to the DSSP command line utility | |
ost.bindings.hbplus | Perform hydrogen bond analysis | |
ost.bindings.hhblits3 | Search related sequences in databases | |
ost.bindings.kclust | Perform fast and sensitive clustering | |
ost.bindings.lga | Find 3D similarities in protein structures | |
ost.bindings.naccess | Calculate accessible area of a molecule | |
ost.bindings.tmtools | Sequence dependent and independent structure superposition | |
| c | ||
ost.conop | The conop modules implement different strategies to derive connectivity information of molecules. | |
ost.conop.cleanup | Contains functions to sanitize (cleanup) structures by using information from the compound library. | |
| g | ||
ost.geom | Functions and classes for vectors, matrices and geometrical objects in 2, 3 and four dimensions | |
ost.gfx | Realtime 3D Rendering | |
ost.gui | ||
| i | ||
ost.img | Images and density maps | |
ost.img.alg | Image processing algorithms | |
ost.io | Input and output of sequences, alignments, structures, images and density maps. | |
| m | ||
ost.mol | Contains classes and functions to deal with molecular structures and surfaces | |
ost.mol.alg | Algorithms operating on molecular structures | |
ost.mol.alg.chain_mapping | Chain mapping in assemblies | |
ost.mol.alg.helix_kinks | ||
ost.mol.alg.ligand_scoring | Scoring of ligands | |
ost.mol.alg.qsscore | QS Score implementation | |
ost.mol.alg.qsscoring | Scoring of quaternary structures | |
ost.mol.alg.stereochemistry | Stereochemistry checks | |
ost.mol.alg.structure_analysis | ||
ost.mol.alg.trajectory_analysis | ||
ost.mol.mm | Wrapper for OpenMM molecular mechanics simulations | |
ost.mol.mm.antechamber | ||
| s | ||
ost.seq | Contains classes and functions to deal with sequences and alignments | |
ost.seq.alg | Algorithms for sequences | |
ost.settings | Helper Functions to Locate Files and Retrieve Preferences | |
| t | ||
ost.table | Working with tabular data | |
ost.testutils | Helper Functions to Run Python Unittests |
