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extract_data_helper.hh
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1 //------------------------------------------------------------------------------
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4 // Copyright (C) 2008-2020 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
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18 //------------------------------------------------------------------------------
19 
20 #ifndef OST_DB_EXTRACT_DATA_HELPER_HH
21 #define OST_DB_EXTRACT_DATA_HELPER_HH
22 
23 #include <ost/geom/vec3.hh>
25 #include <ost/db/linear_indexer.hh>
28 
29 namespace ost { namespace db {
30 
31 void ExtractValidPositions(const String& entry_name, const String& chain_name,
32  LinearIndexer& indexer,
33  LinearCharacterContainer& atom_seqcontainer,
34  LinearPositionContainer& position_container,
36  geom::Vec3List& positions);
37 
38 void ExtractTemplateData(const String& entry_name, const String& chain_name,
39  const ost::seq::AlignmentHandle& aln,
40  LinearIndexer& indexer,
41  LinearCharacterContainer& seqres_container,
42  LinearCharacterContainer& atomseq_container,
43  LinearPositionContainer& position_container,
44  std::vector<int>& residue_numbers,
45  geom::Vec3List& ca_positions);
46 
47 }} //ns
48 
49 #endif
mutable sequence handle.
std::string String
Definition: base.hh:54
void ExtractValidPositions(const String &entry_name, const String &chain_name, LinearIndexer &indexer, LinearCharacterContainer &atom_seqcontainer, LinearPositionContainer &position_container, ost::seq::SequenceHandle &seq, geom::Vec3List &positions)
void ExtractTemplateData(const String &entry_name, const String &chain_name, const ost::seq::AlignmentHandle &aln, LinearIndexer &indexer, LinearCharacterContainer &seqres_container, LinearCharacterContainer &atomseq_container, LinearPositionContainer &position_container, std::vector< int > &residue_numbers, geom::Vec3List &ca_positions)
representation of a multiple sequence alignemnt consisting of two or more sequences ...