20 #ifndef OST_DB_EXTRACT_DATA_HELPER_HH
21 #define OST_DB_EXTRACT_DATA_HELPER_HH
29 namespace ost {
namespace db {
32 LinearIndexer& indexer,
33 LinearCharacterContainer& atom_seqcontainer,
34 LinearPositionContainer& position_container,
40 LinearIndexer& indexer,
41 LinearCharacterContainer& seqres_container,
42 LinearCharacterContainer& atomseq_container,
43 LinearPositionContainer& position_container,
44 std::vector<int>& residue_numbers,
void ExtractValidPositions(const String &entry_name, const String &chain_name, LinearIndexer &indexer, LinearCharacterContainer &atom_seqcontainer, LinearPositionContainer &position_container, ost::seq::SequenceHandle &seq, geom::Vec3List &positions)
void ExtractTemplateData(const String &entry_name, const String &chain_name, const ost::seq::AlignmentHandle &aln, LinearIndexer &indexer, LinearCharacterContainer &seqres_container, LinearCharacterContainer &atomseq_container, LinearPositionContainer &position_container, std::vector< int > &residue_numbers, geom::Vec3List &ca_positions)
representation of a multiple sequence alignemnt consisting of two or more sequences ...