profile_handle.hh File Reference

#include <ost/base.hh>
#include <ost/stdint.hh>
#include <ost/message.hh>
#include <ost/seq/module_config.hh>
#include <string.h>
#include <vector>
#include <map>
#include <fstream>
#include <boost/shared_ptr.hpp>

Go to the source code of this file.

Data Structures
class	HMMData
class	ProfileColumn
class	ProfileHandle
class	ProfileDB

Namespaces
	ost
	ost::seq

Typedefs
typedef boost::shared_ptr < ProfileHandle >	ProfileHandlePtr
typedef boost::shared_ptr < HMMData >	HMMDataPtr
typedef std::vector < ProfileHandlePtr >	ProfileHandleList
typedef boost::shared_ptr < ProfileDB >	ProfileDBPtr
typedef std::vector < ProfileColumn >	ProfileColumnList

Enumerations
enum	HMMTransition {   HMM_M2M = 0, HMM_M2I = 1, HMM_M2D = 2, HMM_I2M = 3,   HMM_I2I = 4, HMM_D2M = 5, HMM_D2D = 6 }