OpenStructure
 All Data Structures Namespaces Files Functions Variables Typedefs Enumerations Enumerator Properties Friends Macros Groups Pages
clip_alignment.hh
Go to the documentation of this file.
1 //------------------------------------------------------------------------------
2 // This file is part of the OpenStructure project <www.openstructure.org>
3 //
4 // Copyright (C) 2008-2020 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
7 // the terms of the GNU Lesser General Public License as published by the Free
8 // Software Foundation; either version 3.0 of the License, or (at your option)
9 // any later version.
10 // This library is distributed in the hope that it will be useful, but WITHOUT
11 // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
12 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
13 // details.
14 //
15 // You should have received a copy of the GNU Lesser General Public License
16 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 // 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
18 //------------------------------------------------------------------------------
19 
20 /*
21  Author: Gerardo Tauriello, Juergen Haas
22  */
23 
24 #ifndef OST_SEQ_ALG_CLIP_ALIGNMENT_HH
25 #define OST_SEQ_ALG_CLIP_ALIGNMENT_HH
26 
29 
30 namespace ost { namespace seq { namespace alg {
31 
43 ClipAlignment(AlignmentHandle& aln, uint n_seq_thresh=2, bool set_offset=true,
44  bool remove_empty=true);
45 }}}
46 
47 #endif
#define DLLEXPORT_OST_SEQ_ALG
int DLLEXPORT_OST_SEQ_ALG ClipAlignment(AlignmentHandle &aln, uint n_seq_thresh=2, bool set_offset=true, bool remove_empty=true)
Clips alignment so that first and last column have at least the desired number of structures...
unsigned int uint
Definition: base.hh:29