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hmm_pseudo_counts.hh File Reference
#include <ost/seq/profile_handle.hh>

Go to the source code of this file.

Data Structures

class  ContextProfile
 
class  ContextProfileDB
 

Namespaces

 ost
 
 ost::seq
 
 ost::seq::alg
 

Typedefs

typedef boost::shared_ptr
< ContextProfileDB > 
ContextProfileDBPtr
 

Functions

void AddTransitionPseudoCounts (ost::seq::ProfileHandle &profile, Real gapb=1.0, Real gabd=0.15, Real gape=1.0)
 
void AddAAPseudoCounts (ost::seq::ProfileHandle &profile, Real a=1.0, Real b=1.5, Real c=1.0)
 
void AddAAPseudoCounts (ost::seq::ProfileHandle &profile, const ContextProfileDB &db, Real a=0.9, Real b=4.0, Real c=1.0)
 
void AddNullPseudoCounts (ost::seq::ProfileHandle &profile)