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| def | BuildCHARMMHBondDonorAcceptorDict () |
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| def | BuildCHARMMHBondDonorEquivalenceDict () |
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| def | BuildCHARMMHBondAcceptorEquivalenceDict () |
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| def | ListEquivalentDonors (donor, donor_swap_dict) |
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| def | ListEquivalentAcceptors (acceptor, acceptor_swap_dict) |
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| def | AreHBonded (donor, acceptor, da_dist=3.9, ha_dist=2.5, dha_angle=1.57, daaa_angle=1.57, haaa_angle=1.57) |
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| def | GetHbondDonorAcceptorList (eh, hbond_donor_acceptor_dict={}, verbose=True) |
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| def | GetHbondListFromDonorAcceptorLists (donor_list, acceptor_list) |
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| def | GetHbondListFromView (eh, hbond_donor_acceptor_dict={}, verbose=True) |
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| def | GetHbondListFromTraj (t, eh, cutoff=0.7, stride=1, swap=False, donor_swap_dict={}, acceptor_swap_dict={}, hbond_donor_acceptor_dict={}, verbose=True) |
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| def | GetHbondListBetweenViews (eh1, eh2, hbond_donor_acceptor_dict={}, verbose=True) |
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| def | GetEquivalentHBonds (ref_hbond_list, eh, swap=False, donor_swap_dict={}, acceptor_swap_dict={}, verbose=True) |
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| def | CalculateHBondScore (ref_eh, eh2, ref_eh2=None, hbond_donor_acceptor_dict={}, swap=False, donor_swap_dict={}, acceptor_swap_dict={}, verbose=True) |
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| def | AnalyzeHBondScore (ref_eh, t, eh2, ref_eh2=None, hbond_donor_acceptor_dict={}, swap=False, donor_swap_dict={}, acceptor_swap_dict={}, first=0, last=-1, stride=1, verbose=True) |
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| def | GetHBondListIntersection (ref_hbond_list, ref_eh, hbond_list, swap=False, donor_swap_dict={}, acceptor_swap_dict={}) |
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