blast.py File Reference

Go to the source code of this file.

Data Structures
class	AlignedPatch
class	BlastHit
class	BlastError

Namespaces
	ost.bindings.blast

Functions
def	ParseBlastOutput (string, seqid_thres=0, evalue_thres=float("infinity"))
def	CreateDB (infasta, dbout, mkdb_cmd=None)
def	BlastVersion (blast_location=None)
def	Blast (query, database, gap_open=11, gap_ext=1, matrix='BLOSUM62', blast_location=None, outfmt=0, filter_low_complexity=True)