semiglobal_align.hh File Reference

#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/subst_weight_matrix.hh>
#include "module_config.hh"

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Namespaces
	ost
	ost::seq
	ost::seq::alg

Functions
AlignmentList DLLIMPORT	SemiGlobalAlign (const ConstSequenceHandle &s1, const ConstSequenceHandle &s2, SubstWeightMatrixPtr &subst, int gap_open=-5, int gap_ext=-2)