- Global ChainView::GetResidueList () const
- Residue list may be unordered. Is it the responsibility of the method building the view to have them ordered or is it our job?
- Global Entity::PickAtom (const geom::Line3 &line, Real line_width=0.5)
- honour object transformation
- Global Entity::PickBond (const geom::Line3 &line, Real line_width=0.5)
- honour object transformation
- Global EntityVisitor::VisitBond (const BondHandle &b)
- not implemented for views
- Global EntityVisitor::VisitTorsion (const TorsionHandle &t)
- Not implemented for views
- Class Primitive
- transparent primitives would require the gfx objects to be ordered back to front. This has to be properly implemented in the rendering system.
- Class Quad
- this class should be part of a more sophisticated polygon rendering class.
- Global ResidueImpl::FindAtom (const String &aname) const
- make the return type a AtomImplList, since there may be several atoms with the given name.
