- a -

• action : ost::gui
• action_path : ost.ost_startup
• args : ost.ost_startup
• argv : ost.ost_startup

- b -

• BLACK : ost::gfx
• BLOSUM100 : ost.seq.alg.mat
• BLOSUM45 : ost.seq.alg.mat
• BLOSUM62 : ost.seq.alg.mat
• BLOSUM80 : ost.seq.alg.mat
• BLUE : ost::gfx

- c -

• compound_lib : ost.gui.dng.init
• CYAN : ost::gfx

- d -

• DARKBLUE : ost::gfx
• DARKCYAN : ost::gfx
• DARKGREEN : ost::gfx
• DARKMAGENTA : ost::gfx
• DARKORANGE : ost::gfx
• DARKPURPLE : ost::gfx
• DARKRED : ost::gfx
• DARKYELLOW : ost::gfx
• DEFAULT_SLOT : ost::io::jpk_tags

- e -

• EPSILON : geom

- f -

• file : ost.gui.dng.init

- g -

• GREEN : ost::gfx
• GREY : ost::gfx
• GRID_REFLECT : ost::io::jpk_tags
• GRID_U_LENGTH : ost::io::jpk_tags
• GRID_V_LENGTH : ost::io::jpk_tags
• gui_mode : ost.ost_startup , ost.gui.gosty_startup

- h -

• hhblits_version : ost.bindings.hhblits
• hhblits_version_string : ost.bindings.hhblits
• HistoryFile : ost.ost_startup
• home : ost.ost_startup , ost.gui.dng.init

- l -

• LIGAND_CHAIN_NAME : ost::mol::alg
• LIGHTBLUE : ost::gfx
• LIGHTCYAN : ost::gfx
• LIGHTGREEN : ost::gfx
• LIGHTMAGENTA : ost::gfx
• LIGHTORANGE : ost::gfx
• LIGHTPURPLE : ost::gfx
• LIGHTRED : ost::gfx
• LIGHTYELLOW : ost::gfx
• LOGO_PATH : ost.gui.init_splash

- m -

• MAGENTA : ost::gfx

- n -

• NUC44 : ost.seq.alg.mat

- o -

• OMF_VERSION : ost::io
• options : ost.ost_startup
• ORANGE : ost::gfx

- p -

• parser : ost.ost_startup
• POLYPEPTIDE_CHAIN_NAMES : ost::mol::alg
• predicate : ost::gui
• processor : ost.gui.dng.init
• profiles : ost::io
• ps1 : ost.ost_startup
• ps2 : ost.ost_startup
• PURPLE : ost::gfx

- r -

• RAW_CONTACT_WEIGHT_MATRIX : ost::seq::alg
• RAW_CONTACT_WEIGHT_MATRIX_RES_LIST : ost::seq::alg
• RAW_PAIR_SUBST_WEIGHT_MATRIX : ost::seq::alg
• RAW_PAIR_SUBST_WEIGHT_MATRIX_RES_LIST : ost::seq::alg
• rcfile : ost.gui.dng.init
• RED : ost::gfx
• REMOTE_REPOSITORIES : ost.io.remote

- s -

• scene : ost::gfx , ost.gui.gosty_startup
• script : ost.ost_startup
• script_argv : ost.gui.dng.init
• SLOT_COUNT : ost::io::jpk_tags
• SPLASH_TEXT : ost.gui.init_splash
• STANDARD_AMINOACIDS : ost::conop
• Stereo : ost::gfx , ost.gui.gosty_startup
• sys_argv_backup : ost.ost_startup

- u -

• usage : ost.ost_startup , ost.gui.dng.init , ost.gui.dng.termuse

- v -

• VA_CYL_MAX_DETAIL : ost::gfx
• VA_ICO_SPHERE_MAX_DETAIL : ost::gfx
• VA_SPHERE_MAX_DETAIL : ost::gfx

- w -

• WATER_CHAIN_NAME : ost::mol::alg
• WHITE : ost::gfx
• working_dir : ost.gui.dng.init

- x -

• X : geom::Axis

- y -

• Y : geom::Axis
• YELLOW : ost::gfx

- z -

• Z : geom::Axis