profile_handle.hh File Reference

#include <ost/base.hh>
#include <ost/stdint.hh>
#include <ost/message.hh>
#include <ost/seq/module_config.hh>
#include <string.h>
#include <vector>
#include <map>
#include <fstream>
#include <boost/shared_ptr.hpp>

Go to the source code of this file.

Data Structures
class	HMMData
class	ProfileColumn
class	ProfileHandle
class	ProfileDB

Namespaces
namespace	ost
namespace	ost::seq

Typedefs
typedef boost::shared_ptr< ProfileHandle >	ProfileHandlePtr
typedef boost::shared_ptr< HMMData >	HMMDataPtr
typedef std::vector< ProfileHandlePtr >	ProfileHandleList
typedef boost::shared_ptr< ProfileDB >	ProfileDBPtr
typedef std::vector< ProfileColumn >	ProfileColumnList

Enumerations
enum	HMMTransition {   HMM_M2M = 0 , HMM_M2I = 1 , HMM_M2D = 2 , HMM_I2M = 3 ,   HMM_I2I = 4 , HMM_D2M = 5 , HMM_D2D = 6 }