ContactScorerResultIPS Class Reference

Public Member Functions
	__init__ (self, n_trg_int_res, n_mdl_int_res, n_union, n_intersection)
	n_trg_int_res (self)
	n_mdl_int_res (self)
	precision (self)
	recall (self)
	ips (self)

Protected Attributes
	_n_trg_int_res
	_n_mdl_int_res
	_n_union
	_n_intersection

Detailed Description

Holds data relevant to compute ips

Definition at line 371 of file contact_score.py.

Constructor & Destructor Documentation

__init__()

__init__	(		self,
			n_trg_int_res,
			n_mdl_int_res,
			n_union,
			n_intersection
	)

Definition at line 375 of file contact_score.py.

Member Function Documentation

ips()

ips

(

self

)

 The Interface Patch Similarity score (IPS)

Jaccard coefficient of interface residues in model/target.
Technically thats :attr:`intersection`/:attr:`union` 

:type: :class:`float`

Definition at line 426 of file contact_score.py.

n_mdl_int_res()

n_mdl_int_res

(

self

)

 Number of interface residues in model

:type: :class:`int`

Definition at line 390 of file contact_score.py.

n_trg_int_res()

n_trg_int_res

(

self

)

 Number of interface residues in target

:type: :class:`int`

Definition at line 382 of file contact_score.py.

precision()

precision

(

self

)

 Precision of model interface residues

The fraction of model interface residues that are also interface
residues in target

:type: :class:`int`

Definition at line 398 of file contact_score.py.

recall()

recall

(

self

)

 Recall of model interface residues

The fraction of target interface residues that are also interface
residues in model

:type: :class:`int`

Definition at line 412 of file contact_score.py.

Field Documentation

_n_intersection

_n_intersection

protected

Definition at line 379 of file contact_score.py.

_n_mdl_int_res

_n_mdl_int_res

protected

Definition at line 377 of file contact_score.py.

_n_trg_int_res

_n_trg_int_res

protected

Definition at line 376 of file contact_score.py.

_n_union

_n_union

protected

Definition at line 378 of file contact_score.py.

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The documentation for this class was generated from the following file:

• build-dev/stage/lib64/python3.11/site-packages/ost/mol/alg/contact_score.py