ContactScorerResultICS Class Reference

Public Member Functions
	__init__ (self, n_trg_contacts, n_mdl_contacts, n_union, n_intersection)
	n_trg_contacts (self)
	n_mdl_contacts (self)
	precision (self)
	recall (self)
	ics (self)

Protected Attributes
	_n_trg_contacts
	_n_mdl_contacts
	_n_union
	_n_intersection

Detailed Description

Holds data relevant to compute ics

Definition at line 302 of file contact_score.py.

Constructor & Destructor Documentation

__init__()

__init__	(		self,
			n_trg_contacts,
			n_mdl_contacts,
			n_union,
			n_intersection
	)

Definition at line 306 of file contact_score.py.

Member Function Documentation

ics()

ics

(

self

)

 The Interface Contact Similarity score (ICS)

Combination of :attr:`precision` and :attr:`recall` using the F1-measure

:type: :class:`float`

Definition at line 355 of file contact_score.py.

n_mdl_contacts()

n_mdl_contacts

(

self

)

 Number of contacts in model

:type: :class:`int`

Definition at line 321 of file contact_score.py.

n_trg_contacts()

n_trg_contacts

(

self

)

 Number of contacts in target

:type: :class:`int`

Definition at line 313 of file contact_score.py.

precision()

precision

(

self

)

 Precision of model contacts

The fraction of model contacts that are also present in target

:type: :class:`int`

Definition at line 329 of file contact_score.py.

recall()

recall

(

self

)

 Recall of model contacts

The fraction of target contacts that are also present in model

:type: :class:`int`

Definition at line 342 of file contact_score.py.

Field Documentation

_n_intersection

_n_intersection

protected

Definition at line 310 of file contact_score.py.

_n_mdl_contacts

_n_mdl_contacts

protected

Definition at line 308 of file contact_score.py.

_n_trg_contacts

_n_trg_contacts

protected

Definition at line 307 of file contact_score.py.

_n_union

_n_union

protected

Definition at line 309 of file contact_score.py.

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The documentation for this class was generated from the following file:

• build-dev/stage/lib64/python3.11/site-packages/ost/mol/alg/contact_score.py