trajectory_analysis.py File Reference

Go to the source code of this file.

Namespaces
namespace	ost
namespace	ost::mol
namespace	ost::mol::alg
namespace	ost.mol.alg.trajectory_analysis

Functions
	smooth (vec, n)
	RMSD_Matrix_From_Traj (t, sele, first=0, last=-1, align=True, align_sele=None)
	PairwiseDistancesFromTraj (t, sele, first=0, last=-1, seq_sep=1)
	DistanceMatrixFromPairwiseDistances (distances, p=2)
	DistRMSDFromTraj (t, sele, ref_sele, radius=7.0, average=False, seq_sep=4, first=0, last=-1)
	AverageDistanceMatrixFromTraj (t, sele, first=0, last=-1)
	AnalyzeDistanceFluctuationMatrix (t, sele, first=0, last=-1)
	IterativeSuperposition (t, sele, threshold=1.0, initial_sele=None, iterations=5, ref_frame=0)