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| AtomView () |
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| AtomView (const ResidueView &residue_view, const AtomHandle &atom) |
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ResidueView | GetResidue () const |
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EntityView | GetEntity () const |
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AtomHandle | GetHandle () const |
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BondHandleList | GetBondList () const |
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int | GetBondCount () const |
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AtomViewList | GetBondPartners () const |
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void | RemoveBonds () |
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void | Apply (EntityVisitor &visitor) |
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void | Apply (EntityViewVisitor &visitor) |
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unsigned long | GetHashCode () const |
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bool | operator== (const AtomView &rhs) const |
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bool | operator!= (const AtomView &rhs) const |
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| operator bool () const |
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bool | IsValid () const |
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| AtomBase () |
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| AtomBase (const impl::AtomImplPtr &impl) |
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const String & | GetName () const |
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void | SetName (const String &atom_name) |
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const geom::Vec3 & | GetPos () const |
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const geom::Vec3 & | GetOriginalPos () const |
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geom::Vec3 | GetAltPos (const String &alt_group) const |
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Real | GetAltBFactor (const String &alt_group) const |
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Real | GetAltOcc (const String &alt_group) const |
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std::vector< String > | GetAltGroupNames () const |
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String | GetQualifiedName () const |
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String | GetStringProperty (Prop::ID prop_id) const |
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Real | GetFloatProperty (Prop::ID prop_id) const |
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int | GetIntProperty (Prop::ID prop_id) const |
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unsigned long | GetIndex () const |
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Real | GetRadius () const |
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const String & | GetElement () const |
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bool | IsHetAtom () const |
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Real | GetBFactor () const |
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void | SetBFactor (Real factor) |
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void | SetOccupancy (Real occ) |
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void | SetCharge (Real charge) |
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void | SetMass (Real mass) |
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void | SetHetAtom (bool het) |
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void | SetRadius (Real radius) |
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void | SetIndex (const unsigned long index) |
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const geom::Mat3 & | GetAnisou () const |
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void | SetAnisou (const geom::Mat3 &anisou) |
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Real | GetMass () const |
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Real | GetCharge () const |
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Real | GetOccupancy () const |
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const impl::AtomImplPtr & | Impl () const |
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impl::AtomImplPtr & | Impl () |
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void | SetElement (const String &element) |
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| operator bool () const |
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bool | IsValid () const |
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void | ClearProps () |
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void | SetStringProp (const String &key, const String &value) |
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void | SetFloatProp (const String &key, Real value) |
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void | SetIntProp (const String &key, int value) |
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void | SetBoolProp (const String &key, bool value) |
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void | SetVec3Prop (const String &key, geom::Vec3 value) |
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void | RemoveProp (const String &key) |
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bool | HasProp (const String &key) const |
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String | GetPropAsString (const String &key) const |
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String | GetStringProp (const String &key) const |
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String | GetStringProp (const String &key, const String &def) const |
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Real | GetFloatProp (const String &key) const |
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Real | GetFloatProp (const String &key, Real def) const |
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int | GetIntProp (const String &key) const |
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int | GetIntProp (const String &key, int def) const |
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bool | GetBoolProp (const String &key) const |
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bool | GetBoolProp (const String &key, bool def) const |
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geom::Vec3 | GetVec3Prop (const String &key) const |
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std::map< String,
GenericPropValue > | GetPropMap () const |
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std::vector< String > | GetPropList () const |
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definition of AtomView
Definition at line 34 of file atom_view.hh.