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Data Structures | Functions
ost.bindings.ialign Namespace Reference

Data Structures

class  iAlignResult
 

Functions

def iAlign
 

Function Documentation

def ost.bindings.ialign.iAlign (   model1,
  model2,
  ialign = None 
)
Compare protein-protein interfaces of the structures of two pairs of
protein complexes and suporpose them.


:param model1: The model structure. If the superposition is successful, will 
               be superposed onto the reference structure
:type model1: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle`
:param model2: The reference structure
:type model2: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle`
:param ialign: If not None, the path to the ialign executable.
:returns: The result of the tmscore superposition
:rtype: :class:`iAlignResult`

:raises: :class:`~ost.settings.FileNotFound` if tmalign could not be located.
:raises: :class:`RuntimeError` if the superposition failed

Definition at line 156 of file ialign.py.