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Public Member Functions | Static Public Member Functions
ClustalIOHandler Class Reference

#include <clustal_io_handler.hh>

Inherits SequenceIOHandler, and SequenceIOHandler.

Public Member Functions

virtual void Import (seq::SequenceList &ali, const boost::filesystem::path &loc)
 
virtual void Export (const seq::ConstSequenceList &ent, const boost::filesystem::path &loc) const
 
virtual void Import (seq::SequenceList &ent, std::istream &instream)
 
virtual void Export (const seq::ConstSequenceList &ent, std::ostream &ostream) const
 
virtual void Import (seq::SequenceList &ali, const boost::filesystem::path &loc)
 
virtual void Export (const seq::ConstSequenceList &ent, const boost::filesystem::path &loc) const
 
virtual void Import (seq::SequenceList &ent, std::istream &instream)
 
virtual void Export (const seq::ConstSequenceList &ent, std::ostream &ostream) const
 
- Public Member Functions inherited from SequenceIOHandler
virtual ~SequenceIOHandler ()
 
virtual ~SequenceIOHandler ()
 

Static Public Member Functions

static bool ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
 
static bool ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
 
static String GetFormatName ()
 
static String GetFormatDescription ()
 
static bool ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
 
static bool ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
 
static String GetFormatName ()
 
static String GetFormatDescription ()
 

Detailed Description

Definition at line 29 of file clustal_io_handler.hh.

Member Function Documentation

virtual void Export ( const seq::ConstSequenceList &  ent,
const boost::filesystem::path &  loc 
) const
virtual

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList &  ent,
const boost::filesystem::path &  loc 
) const
virtual

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList &  ent,
std::ostream &  ostream 
) const
virtual

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList &  ent,
std::ostream &  ostream 
) const
virtual

Implements SequenceIOHandler.

static String GetFormatDescription ( )
inlinestatic

Definition at line 48 of file clustal_io_handler.hh.

static String GetFormatDescription ( )
inlinestatic

Definition at line 48 of file clustal_io_handler.hh.

static String GetFormatName ( )
inlinestatic

Definition at line 47 of file clustal_io_handler.hh.

static String GetFormatName ( )
inlinestatic

Definition at line 47 of file clustal_io_handler.hh.

virtual void Import ( seq::SequenceList &  ali,
const boost::filesystem::path &  loc 
)
virtual

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList &  ali,
const boost::filesystem::path &  loc 
)
virtual

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList &  ent,
std::istream &  instream 
)
virtual

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList &  ent,
std::istream &  instream 
)
virtual

Implements SequenceIOHandler.

static bool ProvidesExport ( const boost::filesystem::path &  loc,
const String &  format = "auto" 
)
static
static bool ProvidesExport ( const boost::filesystem::path &  loc,
const String &  format = "auto" 
)
static
static bool ProvidesImport ( const boost::filesystem::path &  loc,
const String &  format = "auto" 
)
static
static bool ProvidesImport ( const boost::filesystem::path &  loc,
const String &  format = "auto" 
)
static
The documentation for this class was generated from the following files:
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