This document is for OpenStructure version 1.5, the latest version is 2.9.0 !

lga - Find 3D similarities in protein structures

GDT(pdb1, pdb2, chain1='', chain2='', reference_length=None, lga_bin=None)

Calculate GDT value between pdb1 and pdb2. It is assumed that the corresponding residues in pdb1 and pdb2 have the same residue numbers.

class GDTResult(rotation, shift, gdt_ts, gdt_ha)

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Contents

Documentation is available for the following OpenStructure versions:

dev / 2.9.0 / 2.8 / 2.7 / 2.6 / 2.5 / 2.4 / 2.3.1 / 2.3 / 2.2 / 2.1 / 2.0 / 1.9 / 1.8 / 1.7.1 / 1.7 / 1.6 / (Currently viewing 1.5) / 1.4 / 1.3 / 1.2 / 1.11 / 1.10 / 1.1

This documentation is still under heavy development!
If something is missing or if you need the C++ API description in doxygen style, check our old documentation for further information.