OpenStructure documentation

For Starters

Installation: install from source

Tutorial Style: introduction | molecules intro | images intro | graphics intro

Molecules

Overview: molecules intro | mol overview | graphical entity | entity | queries | algorithms | mm

Trajectories: basics | analysis

Input/Output: loading and saving molecules

Connectivity: the conop module | compound library

Density Maps and Images

Overview: images intro | img module | img.alg module

Input/Output: loading and saving density maps

Sequences and Alignments

Overview: sequence module | sequence algorithms

Input/Output: loading and saving sequences

Graphics

Overview: graphics intro

Main Classes: the scene | graphical entity

Graphical User Interface

Overview: module overview | organization tools

Widgets: python shell | sequence viewer

Varia

Datasets: tabular data

Supported File Formats: structure formats | sequence formats | sequence profile formats | image formats

Users: Reporting a problem

lDDT: lDDT command line executable and Python API

Molck: Molecular Checker

Actions: OST Actions

Database: Efficiently store structural data

Extending OpenStructure

External Tools: bindings

Howto: write new modules | integrate third-party tools | logging | instructions for developers

Search

Enter search terms or a module, class or function name.

Contents

Documentation is available for the following OpenStructure versions:

(Currently viewing dev) / 2.9.0 / 2.8 / 2.7 / 2.6 / 2.5 / 2.4 / 2.3.1 / 2.3 / 2.2 / 2.1 / 2.0 / 1.9 / 1.8 / 1.7.1 / 1.7 / 1.6 / 1.5 / 1.4 / 1.3 / 1.2 / 1.11 / 1.10 / 1.1

This documentation is still under heavy development!
If something is missing or if you need the C++ API description in doxygen style, check our old documentation for further information.