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distance_map.hh File Reference
#include <numeric>
#include <cmath>
#include <algorithm>
#include <ost/tri_matrix.hh>
#include <ost/integrity_error.hh>
#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/module_config.hh>

Go to the source code of this file.

Data Structures

struct  Distances
 
class  DistanceMap
 

Namespaces

 ost
 
 ost::seq
 
 ost::seq::alg
 

Typedefs

typedef boost::shared_ptr
< DistanceMap > 
DistanceMapPtr
 

Functions

DistanceMapPtr
DLLEXPORT_OST_SEQ_ALG 
CreateDistanceMap (const seq::AlignmentHandle &alignment)