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Data Structures | Functions
ost.bindings.tmtools Namespace Reference

Data Structures

class  MMAlignResult
 
class  TMScoreResult
 

Functions

def TMAlign
 
def MMAlign
 
def TMScore
 

Function Documentation

def ost.bindings.tmtools.MMAlign (   model1,
  model2,
  mmalign = None 
)
Run tmalign on two protein structures

Definition at line 241 of file tmtools.py.

def ost.bindings.tmtools.TMAlign (   model1,
  model2,
  tmalign = None 
)
Performs a sequence independent superposition of model1 onto model2, the 
reference.


:param model1: The model structure. If the superposition is successful, will 
               be superposed onto the reference structure
:type model1: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle`
:param model2: The reference structure
:type model2: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle`
:param tmalign: If not None, the path to the tmalign executable.
:returns: The result of the tmscore superposition
:rtype: :class:`ost.bindings.TMAlignResult`

:raises: :class:`~ost.settings.FileNotFound` if tmalign could not be located.
:raises: :class:`RuntimeError` if the superposition failed

Definition at line 217 of file tmtools.py.

def ost.bindings.tmtools.TMScore (   model1,
  model2,
  tmscore = None 
)
Performs a sequence dependent superposition of model1 onto model2, 
the reference.

:param model1: The model structure. If the superposition is successful, will 
               be superposed onto the reference structure
:type model1: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle`
:param model2: The reference structure
:type model2: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle`
:param tmscore: If not None, the path to the tmscore executable.
:returns: The result of the tmscore superposition
:rtype: :class:`TMScoreResult`

:raises: :class:`~ost.settings.FileNotFound` if tmalign could not be located.
:raises: :class:`RuntimeError` if the superposition failed

Definition at line 251 of file tmtools.py.