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stage
include
ost
seq
alg
clip_alignment.hh
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//------------------------------------------------------------------------------
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// This file is part of the OpenStructure project <www.openstructure.org>
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//
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// Copyright (C) 2008-2016 by the OpenStructure authors
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//
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// This library is free software; you can redistribute it and/or modify it under
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// the terms of the GNU Lesser General Public License as published by the Free
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// Software Foundation; either version 3.0 of the License, or (at your option)
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// any later version.
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// This library is distributed in the hope that it will be useful, but WITHOUT
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// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
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// details.
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//
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// You should have received a copy of the GNU Lesser General Public License
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// along with this library; if not, write to the Free Software Foundation, Inc.,
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// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
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//------------------------------------------------------------------------------
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/*
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Author: Gerardo Tauriello, Juergen Haas
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*/
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#ifndef OST_SEQ_ALG_CLIP_ALIGNMENT_HH
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#define OST_SEQ_ALG_CLIP_ALIGNMENT_HH
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#include <
ost/seq/alignment_handle.hh
>
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#include <
ost/seq/alg/module_config.hh
>
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namespace
ost {
namespace
seq {
namespace
alg {
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int
DLLEXPORT_OST_SEQ_ALG
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ClipAlignment
(AlignmentHandle& aln,
uint
n_seq_thresh=2,
bool
set_offset=
true
,
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bool
remove_empty=
true
);
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}}}
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#endif
DLLEXPORT_OST_SEQ_ALG
#define DLLEXPORT_OST_SEQ_ALG
Definition:
module_config.hh:27
module_config.hh
alignment_handle.hh
ost::seq::alg::ClipAlignment
int DLLEXPORT_OST_SEQ_ALG ClipAlignment(AlignmentHandle &aln, uint n_seq_thresh=2, bool set_offset=true, bool remove_empty=true)
Clips alignment so that first and last column have at least the desired number of structures...
uint
unsigned int uint
Definition:
base.hh:29
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