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Here is a list of all files with brief descriptions:
[detail level
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modules
config
base.hh
config.hh
dllexport.hh
version.hh
stage
include
ost
bindings
wrap_tmalign.hh
conop
amino_acids.hh
compound.hh
compound_lib.hh
compound_lib_base.hh
conop.hh
diag.hh
heuristic.hh
minimal_compound_lib.hh
model_check.hh
module_config.hh
processor.hh
ring_finder.hh
rule_based.hh
db
binary_container.hh
extract_data_helper.hh
linear_indexer.hh
module_config.hh
paged_array.hh
sqlite_conv.hh
sqlite_wrap.hh
export_helper
generic_property_def.hh
pair_to_tuple_conv.hh
vec_to_list_conv.hh
geom
export_helper
vector.hh
aligned_cuboid.hh
circular_iterator.hh
composite.hh
composite2.hh
composite2_op.hh
composite3.hh
composite3_op.hh
composite_op.hh
constants.hh
def.hh
exc.hh
geom.hh
mat.hh
mat2.hh
mat3.hh
mat4.hh
module_config.hh
point_cloud.hh
quat.hh
transform.hh
vec.hh
vec2.hh
vec3.hh
vec4.hh
vec_mat_predicates.hh
vecmat2_op.hh
vecmat3_op.hh
vecmat4_op.hh
vecmat_op.hh
img
alg
alg_mirror.hh
alg_shift.hh
alg_transform.hh
anisotropic.hh
auto_correlate.hh
clear.hh
clip_min_max.hh
conjugate.hh
convolute.hh
correlate.hh
cross_correlate.hh
density_slice.hh
dft.hh
discrete_shrink.hh
fft.hh
fftw_helper.hh
fill.hh
filter.hh
fourier_filters.hh
fractional_shift.hh
gaussian.hh
gaussian_gradient_magnitude.hh
gaussian_laplacian.hh
highest_peak_search_3d.hh
histogram.hh
line_average.hh
line_iterator.hh
local_sigma_threshold.hh
mask_image.hh
module_config.hh
negate.hh
norm.hh
norm_linear.hh
norm_log.hh
norm_od.hh
normalizer.hh
normalizer_factory.hh
polar.hh
power_spectrum.hh
randomize.hh
rscrosscorr.hh
smooth_mask_image.hh
stat.hh
stat_accumulator.hh
stat_min_max.hh
threshold.hh
transcendentals.hh
transform.hh
transform_fw.hh
transformation_base.hh
transformations.hh
image_state
dispatch.hh
image_state.hh
image_state_algorithm.hh
image_state_base.hh
image_state_base_fw.hh
image_state_def.hh
image_state_factory.hh
image_state_frequency_domain.hh
image_state_fw.hh
image_state_half_frequency_domain.hh
image_state_impl.hh
image_state_spatial_domain.hh
image_state_visitor.hh
image_state_visitor_fw.hh
index.hh
type_fw.hh
value_holder.hh
raster_image
raster_image.hh
algorithm.hh
circle_mask.hh
composite_mask.hh
data.hh
data_algorithm.hh
data_observer.hh
data_types.hh
debug.hh
dllexport.hh
extent.hh
extent_iterator.hh
extent_mask.hh
image.hh
image_factory.hh
image_fw.hh
image_handle.hh
image_handle_fw.hh
image_impl.hh
image_list.hh
image_state.hh
image_state_fw.hh
inverted_mask.hh
map.hh
mask.hh
mask_base.hh
mask_base_fw.hh
mask_op.hh
mask_visitor.hh
module_config.hh
normalizer_fw.hh
normalizer_impl.hh
null_data.hh
observable.hh
paste_impl.hh
peak.hh
phase.hh
physical_units.hh
pixel_sampling.hh
point.hh
point_list.hh
polygon_mask.hh
progress.hh
size.hh
spherical_mask.hh
util.hh
value_util.hh
vecmat.hh
io
img
image_format.hh
jpk_util.hh
load_map.hh
map_io_dat_handler.hh
map_io_df3_handler.hh
map_io_dm3_handler.hh
map_io_dx_handler.hh
map_io_handler.hh
map_io_ipl_handler.hh
map_io_jpk_handler.hh
map_io_mrc_handler.hh
map_io_nanoscope_handler.hh
map_io_png_handler.hh
map_io_situs_handler.hh
map_io_spi_handler.hh
map_io_tiff_handler.hh
tiff_util.hh
mol
chemdict_parser.hh
dcd_io.hh
entity_io_crd_handler.hh
entity_io_handler.hh
entity_io_mae_handler.hh
entity_io_mmcif_handler.hh
entity_io_pdb_handler.hh
entity_io_pqr_handler.hh
entity_io_sdf_handler.hh
io_profile.hh
load_entity.hh
load_surface.hh
mmcif_info.hh
mmcif_reader.hh
pdb_reader.hh
pdb_str.hh
pdb_writer.hh
save_entity.hh
sdf_reader.hh
sdf_writer.hh
star_parser.hh
stereochemical_params_reader.hh
surface_io_handler.hh
surface_io_msms_handler.hh
seq
clustal_io_handler.hh
fasta_io_handler.hh
hhm_io_handler.hh
load.hh
pir_io_handler.hh
profile_io_handler.hh
promod_io_handler.hh
pssm_io_handler.hh
save.hh
sequence_io_handler.hh
binary_data_sink.hh
binary_data_source.hh
chemdict_parser.hh
clustal_io_handler.hh
container_serialization.hh
convert.hh
converting_streams.hh
dcd_io.hh
entity_io_crd_handler.hh
entity_io_handler.hh
entity_io_mae_handler.hh
entity_io_mmcif_handler.hh
entity_io_pdb_handler.hh
entity_io_pqr_handler.hh
entity_io_sdf_handler.hh
fasta_io_handler.hh
formatted_line.hh
hhm_io_handler.hh
image_format.hh
io_exception.hh
io_manager.hh
io_profile.hh
io_utils.hh
jpk_util.hh
load.hh
load_entity.hh
load_map.hh
load_surface.hh
map_io_dat_handler.hh
map_io_df3_handler.hh
map_io_dm3_handler.hh
map_io_dx_handler.hh
map_io_handler.hh
map_io_ipl_handler.hh
map_io_jpk_handler.hh
map_io_mrc_handler.hh
map_io_nanoscope_handler.hh
map_io_png_handler.hh
map_io_situs_handler.hh
map_io_spi_handler.hh
map_io_tiff_handler.hh
mmcif_info.hh
mmcif_reader.hh
module_config.hh
pdb_reader.hh
pdb_str.hh
pdb_writer.hh
pir_io_handler.hh
profile_io_handler.hh
promod_io_handler.hh
pssm_io_handler.hh
save.hh
save_entity.hh
sdf_reader.hh
sdf_writer.hh
sequence_io_handler.hh
star_parser.hh
stereochemical_params_reader.hh
surface_io_handler.hh
surface_io_msms_handler.hh
swap_util.hh
tiff_util.hh
mol
alg
accessibility.hh
adjacency_bitmap.hh
clash_score.hh
consistency_checks.hh
construct_cbeta.hh
contact_overlap.hh
distance_rmsd_test.hh
distance_test_common.hh
domain_find.hh
entity_to_density.hh
filter_clashes.hh
find_membrane.hh
local_dist_diff_test.hh
module_config.hh
molck.hh
nonstandard.hh
pdbize.hh
sec_struct.hh
sec_structure_segments.hh
similarity_matrix.hh
structure_analysis.hh
superpose_frames.hh
svd_superpose.hh
trajectory_analysis.hh
impl
atom_group.hh
atom_impl.hh
atom_impl_fw.hh
atom_prop.hh
chain_impl.hh
chain_impl_fw.hh
connector_impl.hh
connector_impl_fw.hh
dihedral.hh
entity_impl.hh
entity_impl_fw.hh
fragment_impl.hh
fragment_impl_fw.hh
pointer_iterator.hh
query_ast.hh
query_ast_fw.hh
query_impl.hh
query_impl_fw.hh
residue_impl.hh
residue_impl_fw.hh
surface_impl.hh
surface_impl_fw.hh
torsion_impl.hh
torsion_impl_fw.hh
mm
block_modifiers.hh
buildingblock.hh
density_force.hh
density_force_impl.hh
density_kernels.hh
ff_reader.hh
forcefield.hh
gromacs_block_modifiers.hh
heuristic_block_modifiers.hh
index.hh
interaction.hh
modeller.hh
observer.hh
reference_density_kernel_factory.hh
reference_density_kernels.hh
settings.hh
simulation.hh
state_extractor.hh
steep.hh
system_creator.hh
topology.hh
topology_creator.hh
atom_base.hh
atom_handle.hh
atom_view.hh
bond_handle.hh
bond_table.hh
bounding_box.hh
builder.hh
chain_base.hh
chain_handle.hh
chain_type.hh
chain_view.hh
chem_class.hh
chem_type.hh
coord_frame.hh
coord_group.hh
coord_source.hh
editor_base.hh
editor_type_fw.hh
entity_base.hh
entity_handle.hh
entity_observer.hh
entity_observer_fw.hh
entity_property_mapper.hh
entity_view.hh
entity_visitor.hh
entity_visitor_fw.hh
handle_type_fw.hh
ics_editor.hh
in_mem_coord_source.hh
module_config.hh
mol.hh
not_connected_error.hh
property_id.hh
query.hh
query_error.hh
query_state.hh
query_view_wrapper.hh
residue_base.hh
residue_handle.hh
residue_prop.hh
residue_view.hh
sec_structure.hh
spatial_organizer.hh
surface.hh
surface_builder.hh
surface_handle.hh
surface_prop.hh
torsion_handle.hh
transfer_connectivity.hh
transform.hh
view_op.hh
view_type_fw.hh
xcs_editor.hh
seq
alg
alignment_opts.hh
clip_alignment.hh
conservation.hh
contact_prediction_score.hh
contact_weight_matrix.hh
default_contact_weight_matrix.hh
default_pair_subst_weight_matrix.hh
distance_map.hh
entropy.hh
global_align.hh
ins_del.hh
local_align.hh
merge_pairwise_alignments.hh
module_config.hh
pair_subst_weight_matrix.hh
semiglobal_align.hh
sequence_identity.hh
sequence_similarity.hh
subst_weight_matrix.hh
variance_map.hh
impl
sequence_impl.hh
sequence_impl_fw.hh
sequence_list_impl.hh
sequence_list_impl_fw.hh
sequence_list_iterator.hh
aligned_column.hh
aligned_column_iterator.hh
aligned_region.hh
alignment_handle.hh
invalid_sequence.hh
module_config.hh
profile_handle.hh
sequence_handle.hh
sequence_list.hh
sequence_op.hh
views_from_sequences.hh
test_utils
compare_files.hh
base.hh
boost_filesystem_helper.hh
config.hh
dllexport.hh
dyn_cast.hh
fixed_string.hh
generic_property.hh
integrity_error.hh
invalid_handle.hh
log.hh
log_sink.hh
message.hh
module_config.hh
platform.hh
pod_vector.hh
profile.hh
ptr_observer.hh
range.hh
stdint.hh
stdint_msc.hh
string_ref.hh
tri_matrix.hh
units.hh
version.hh
lib64
python2.7
site-packages
ost
bindings
__init__.py
align_3dcomb.py
blast.py
cadscore.py
clustalw.py
dssp.py
hbplus.py
hhblits.py
ialign.py
kclust.py
lga.py
msms.py
naccess.py
tmtools.py
utils.py
conop
__init__.py
cleanup.py
db
__init__.py
geom
__init__.py
img
alg
__init__.py
__init__.py
io
__init__.py
remote.py
repository.py
mol
alg
__init__.py
hbond.py
helix_kinks.py
qsscoring.py
structure_analysis.py
superpose.py
trajectory_analysis.py
views.py
mm
__init__.py
antechamber.py
__init__.py
seq
alg
__init__.py
mat.py
renumber.py
__init__.py
__init__.py
ost_startup.py
settings.py
stutil.py
table.py
table_selector.py
testutils.py
xmlrunner.py
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