AlignedPatch Class Reference

Public Member Functions
def	__init__

Data Fields
	aln
	bit_score
	score
	evalue

---

Detailed Description

An aligned patch, aka. HSP

.. attribute:: aln

  The local alignment. Sequence offset of both sequences in the alignment are
  set to the starting position in the query and target sequence, respectively.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: bit_score

  The bit score of the HSP

.. attribute:: score

  The score of the HSP

.. attribute:: evalue

  The E-value of the HSP

Definition at line 9 of file blast.py.

---

Constructor & Destructor Documentation

def __init__	(		self,
			aln,
			bit_score,
			score,
			evalue
	)

Definition at line 32 of file blast.py.

---

Field Documentation

aln

Definition at line 33 of file blast.py.

bit_score

Definition at line 34 of file blast.py.

evalue

Definition at line 36 of file blast.py.

score

Definition at line 35 of file blast.py.

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The documentation for this class was generated from the following file:

• stage/lib64/openstructure/ost/bindings/blast.py