AlignedPatch Class Reference

Public Member Functions
def	__init__

Data Fields
	aln
	bit_score
	score
	evalue
	seqid

---

Detailed Description

An aligned patch, aka. HSP

.. attribute:: aln

  The local alignment. Sequence offset of both sequences in the alignment are
  set to the starting position in the query and target sequence, respectively.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: bit_score

  The bit score of the HSP

.. attribute:: score

  The score of the HSP

.. attribute:: evalue

  The E-value of the HSP

.. attribute:: seqid

  The sequence identity of the HSP

Definition at line 10 of file blast.py.

---

Constructor & Destructor Documentation

def __init__	(		self,
			aln,
			bit_score,
			score,
			evalue,
			seqid
	)

Definition at line 37 of file blast.py.

---

Field Documentation

aln

Definition at line 38 of file blast.py.

bit_score

Definition at line 39 of file blast.py.

evalue

Definition at line 41 of file blast.py.

score

Definition at line 40 of file blast.py.

seqid

Definition at line 42 of file blast.py.

---

The documentation for this class was generated from the following file:

• stage/lib64/python2.5/site-packages/ost/bindings/blast.py